Serveur d'exploration Cyberinfrastructure

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

Identifieur interne : 000010 ( Main/Exploration ); précédent : 000009; suivant : 000011

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

Auteurs : Nirav Merchant [États-Unis] ; Eric Lyons [États-Unis] ; Stephen Goff [États-Unis] ; Matthew Vaughn [États-Unis] ; Doreen Ware [États-Unis] ; David Micklos [États-Unis] ; Parker Antin [États-Unis]

Source :

RBID : PMC:4709069

English descriptors

Abstract

The iPlant Collaborative provides life science research communities access to comprehensive, scalable, and cohesive computational infrastructure for data management; identity management; collaboration tools; and cloud, high-performance, high-throughput computing. iPlant provides training, learning material, and best practice resources to help all researchers make the best use of their data, expand their computational skill set, and effectively manage their data and computation when working as distributed teams. iPlant’s platform permits researchers to easily deposit and share their data and deploy new computational tools and analysis workflows, allowing the broader community to easily use and reuse those data and computational analyses.


Url:
DOI: 10.1371/journal.pbio.1002342
PubMed: 26752627
PubMed Central: 4709069


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences</title>
<author>
<name sortKey="Merchant, Nirav" sort="Merchant, Nirav" uniqKey="Merchant N" first="Nirav" last="Merchant">Nirav Merchant</name>
<affiliation wicri:level="2">
<nlm:aff id="aff001">
<addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>The University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName>
<region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Lyons, Eric" sort="Lyons, Eric" uniqKey="Lyons E" first="Eric" last="Lyons">Eric Lyons</name>
<affiliation wicri:level="2">
<nlm:aff id="aff001">
<addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>The University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName>
<region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Goff, Stephen" sort="Goff, Stephen" uniqKey="Goff S" first="Stephen" last="Goff">Stephen Goff</name>
<affiliation wicri:level="2">
<nlm:aff id="aff001">
<addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>The University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName>
<region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Vaughn, Matthew" sort="Vaughn, Matthew" uniqKey="Vaughn M" first="Matthew" last="Vaughn">Matthew Vaughn</name>
<affiliation wicri:level="4">
<nlm:aff id="aff002">
<addr-line>Texas Advanced Computing Center, The University of Texas at Austin, Austin, Texas, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Texas Advanced Computing Center, The University of Texas at Austin, Austin, Texas</wicri:regionArea>
<placeName>
<region type="state">Texas</region>
<settlement type="city">Austin (Texas)</settlement>
</placeName>
<orgName type="university">Université du Texas à Austin</orgName>
</affiliation>
</author>
<author>
<name sortKey="Ware, Doreen" sort="Ware, Doreen" uniqKey="Ware D" first="Doreen" last="Ware">Doreen Ware</name>
<affiliation wicri:level="2">
<nlm:aff id="aff003">
<addr-line>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Micklos, David" sort="Micklos, David" uniqKey="Micklos D" first="David" last="Micklos">David Micklos</name>
<affiliation wicri:level="2">
<nlm:aff id="aff003">
<addr-line>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Antin, Parker" sort="Antin, Parker" uniqKey="Antin P" first="Parker" last="Antin">Parker Antin</name>
<affiliation wicri:level="2">
<nlm:aff id="aff001">
<addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>The University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName>
<region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">26752627</idno>
<idno type="pmc">4709069</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4709069</idno>
<idno type="RBID">PMC:4709069</idno>
<idno type="doi">10.1371/journal.pbio.1002342</idno>
<date when="2016">2016</date>
<idno type="wicri:Area/Pmc/Corpus">000038</idno>
<idno type="wicri:Area/Pmc/Curation">000038</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000008</idno>
<idno type="wicri:source">PubMed</idno>
<idno type="wicri:Area/PubMed/Corpus">000004</idno>
<idno type="wicri:Area/PubMed/Curation">000004</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000004</idno>
<idno type="wicri:Area/Ncbi/Merge">000702</idno>
<idno type="wicri:Area/Ncbi/Curation">000702</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000702</idno>
<idno type="wicri:doubleKey">1544-9173:2016:Merchant N:the:iplant:collaborative</idno>
<idno type="wicri:Area/Main/Merge">000010</idno>
<idno type="wicri:Area/Main/Curation">000010</idno>
<idno type="wicri:Area/Main/Exploration">000010</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences</title>
<author>
<name sortKey="Merchant, Nirav" sort="Merchant, Nirav" uniqKey="Merchant N" first="Nirav" last="Merchant">Nirav Merchant</name>
<affiliation wicri:level="2">
<nlm:aff id="aff001">
<addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>The University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName>
<region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Lyons, Eric" sort="Lyons, Eric" uniqKey="Lyons E" first="Eric" last="Lyons">Eric Lyons</name>
<affiliation wicri:level="2">
<nlm:aff id="aff001">
<addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>The University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName>
<region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Goff, Stephen" sort="Goff, Stephen" uniqKey="Goff S" first="Stephen" last="Goff">Stephen Goff</name>
<affiliation wicri:level="2">
<nlm:aff id="aff001">
<addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>The University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName>
<region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Vaughn, Matthew" sort="Vaughn, Matthew" uniqKey="Vaughn M" first="Matthew" last="Vaughn">Matthew Vaughn</name>
<affiliation wicri:level="4">
<nlm:aff id="aff002">
<addr-line>Texas Advanced Computing Center, The University of Texas at Austin, Austin, Texas, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Texas Advanced Computing Center, The University of Texas at Austin, Austin, Texas</wicri:regionArea>
<placeName>
<region type="state">Texas</region>
<settlement type="city">Austin (Texas)</settlement>
</placeName>
<orgName type="university">Université du Texas à Austin</orgName>
</affiliation>
</author>
<author>
<name sortKey="Ware, Doreen" sort="Ware, Doreen" uniqKey="Ware D" first="Doreen" last="Ware">Doreen Ware</name>
<affiliation wicri:level="2">
<nlm:aff id="aff003">
<addr-line>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Micklos, David" sort="Micklos, David" uniqKey="Micklos D" first="David" last="Micklos">David Micklos</name>
<affiliation wicri:level="2">
<nlm:aff id="aff003">
<addr-line>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Cold Spring Harbor Laboratory, Cold Spring Harbor, New York</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Antin, Parker" sort="Antin, Parker" uniqKey="Antin P" first="Parker" last="Antin">Parker Antin</name>
<affiliation wicri:level="2">
<nlm:aff id="aff001">
<addr-line>The University of Arizona, Tucson, Arizona, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>The University of Arizona, Tucson, Arizona</wicri:regionArea>
<placeName>
<region type="state">Arizona</region>
</placeName>
</affiliation>
</author>
</analytic>
<series>
<title level="j">PLoS Biology</title>
<idno type="ISSN">1544-9173</idno>
<idno type="eISSN">1545-7885</idno>
<imprint>
<date when="2016">2016</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Computational Biology (organization & administration)</term>
<term>Internet</term>
<term>Software</term>
</keywords>
<keywords scheme="MESH" qualifier="organization & administration" xml:lang="en">
<term>Computational Biology</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Internet</term>
<term>Software</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p>The iPlant Collaborative provides life science research communities access to comprehensive, scalable, and cohesive computational infrastructure for data management; identity management; collaboration tools; and cloud, high-performance, high-throughput computing. iPlant provides training, learning material, and best practice resources to help all researchers make the best use of their data, expand their computational skill set, and effectively manage their data and computation when working as distributed teams. iPlant’s platform permits researchers to easily deposit and share their data and deploy new computational tools and analysis workflows, allowing the broader community to easily use and reuse those data and computational analyses.</p>
</div>
</front>
<back>
<div1 type="bibliography">
<listBibl>
<biblStruct>
<analytic>
<author>
<name sortKey="Goecks, J" uniqKey="Goecks J">J Goecks</name>
</author>
<author>
<name sortKey="Nekrutenko, A" uniqKey="Nekrutenko A">A Nekrutenko</name>
</author>
<author>
<name sortKey="Taylor, J" uniqKey="Taylor J">J Taylor</name>
</author>
<author>
<name sortKey="Galaxy, T" uniqKey="Galaxy T">T Galaxy</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Mclennan, M" uniqKey="Mclennan M">M McLennan</name>
</author>
<author>
<name sortKey="Kennell, R" uniqKey="Kennell R">R Kennell</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Deelman, E" uniqKey="Deelman E">E Deelman</name>
</author>
<author>
<name sortKey="Singh, G" uniqKey="Singh G">G Singh</name>
</author>
<author>
<name sortKey="Su, M H" uniqKey="Su M">M-H Su</name>
</author>
<author>
<name sortKey="Blythe, J" uniqKey="Blythe J">J Blythe</name>
</author>
<author>
<name sortKey="Gil, Y" uniqKey="Gil Y">Y Gil</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Rajasekar, A" uniqKey="Rajasekar A">A Rajasekar</name>
</author>
<author>
<name sortKey="Moore, R" uniqKey="Moore R">R Moore</name>
</author>
<author>
<name sortKey="Hou, C" uniqKey="Hou C">C Hou</name>
</author>
<author>
<name sortKey="Lee, C" uniqKey="Lee C">C Lee</name>
</author>
<author>
<name sortKey="Marciano, R" uniqKey="Marciano R">R Marciano</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Livney, M" uniqKey="Livney M">M Livney</name>
</author>
<author>
<name sortKey="Basney, J" uniqKey="Basney J">J Basney</name>
</author>
<author>
<name sortKey="Raman, R" uniqKey="Raman R">R Raman</name>
</author>
<author>
<name sortKey="Tannenbaum, T" uniqKey="Tannenbaum T">T Tannenbaum</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Merkel, D" uniqKey="Merkel D">D Merkel</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Schnase, Jl" uniqKey="Schnase J">JL Schnase</name>
</author>
<author>
<name sortKey="Duffy, Dq" uniqKey="Duffy D">DQ Duffy</name>
</author>
<author>
<name sortKey="Tamkin, Gs" uniqKey="Tamkin G">GS Tamkin</name>
</author>
<author>
<name sortKey="Nadeau, D" uniqKey="Nadeau D">D Nadeau</name>
</author>
<author>
<name sortKey="Thompson, Jh" uniqKey="Thompson J">JH Thompson</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<affiliations>
<list>
<country>
<li>États-Unis</li>
</country>
<region>
<li>Arizona</li>
<li>Texas</li>
<li>État de New York</li>
</region>
<settlement>
<li>Austin (Texas)</li>
</settlement>
<orgName>
<li>Université du Texas à Austin</li>
</orgName>
</list>
<tree>
<country name="États-Unis">
<region name="Arizona">
<name sortKey="Merchant, Nirav" sort="Merchant, Nirav" uniqKey="Merchant N" first="Nirav" last="Merchant">Nirav Merchant</name>
</region>
<name sortKey="Antin, Parker" sort="Antin, Parker" uniqKey="Antin P" first="Parker" last="Antin">Parker Antin</name>
<name sortKey="Goff, Stephen" sort="Goff, Stephen" uniqKey="Goff S" first="Stephen" last="Goff">Stephen Goff</name>
<name sortKey="Lyons, Eric" sort="Lyons, Eric" uniqKey="Lyons E" first="Eric" last="Lyons">Eric Lyons</name>
<name sortKey="Micklos, David" sort="Micklos, David" uniqKey="Micklos D" first="David" last="Micklos">David Micklos</name>
<name sortKey="Vaughn, Matthew" sort="Vaughn, Matthew" uniqKey="Vaughn M" first="Matthew" last="Vaughn">Matthew Vaughn</name>
<name sortKey="Ware, Doreen" sort="Ware, Doreen" uniqKey="Ware D" first="Doreen" last="Ware">Doreen Ware</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000010 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000010 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Ticri/CIDE
   |area=    CyberinfraV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     PMC:4709069
   |texte=   The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:26752627" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a CyberinfraV1 

Wicri

This area was generated with Dilib version V0.6.25.
Data generation: Thu Oct 27 09:30:58 2016. Site generation: Sun Mar 10 23:08:40 2024